Query Results

Number of results 1000
Lowest scoring result 18.63827
Abstracts of results results.html
Complete abstracts of the articles in Medline predicted to be relevant (limited number per page).
Abstracts of all results ZIP file or all_results.html
All result abstracts on a single page. (can take a long time to load - downloading the zip file is recommended)
Abstracts of input examples inputs.html
Complete abstracts of the Medline records given as relevant training examples. They have been ranked by classifier scores.
PubMed IDs of results results.txt
PubMed IDs and scores of classifier predictions, ranked by decreasing score.
PubMed IDs of inputs inputs.txt
PubMed IDs and scores of the relevant training examples.
Started at 2009/02/16 13:37:25 GMT
Time at which query was started
Finished at 2009/02/16 13:38:37 GMT
Time at which this file was written.
Feature score method scores_bgfreq
Name of the method used to calculate feature scores. Docstring for the method: The prior is 'background frequency' successes, out of 1 total occurrence in each class.
Min Document Frequency 2
We exclude features occurring fewer than this many times in the data
Base score -13.7770974192
The log likelihood ratio of an empty article (one in which every feature failed to occur).
Prior score -14.2527072752
The log of the prior probability ratio for an article being relevant versus irrelevant (added to log likelihood ratio to obtain the final score). Equals the logit of the estimated prevalence of relevant articles in Medline (which may be estimated from the input size or specified separately).
Limit 1000
The maximum number of results to include.
Threshold -30.0
Default Naive Bayes classification threshold is zero. This threshold is the minimum log probability ratio for predicting an article to be relevant.

Feature Statistics

Quantity Relevant Docs Irrelevant Docs
Number of documents 10 17031966
Number of selected, occurring features 129 41209
Total occurrences of selected features 219 231002228
Selected features per Medline record 21.900 13.563
Of the considered feature types, 41209 features are selected out of 43325 occurring at least once in training data. The aggressivity of selection is 1.051. The complete database lists 43326 potential features.

Features with high TF.IDF

Features with TF.IDF above 0.2 or 0.3 could make good keywords. TF.IDF is term frequency times inverse document frequency, where we treat the set of input citations as a single document

TF-IDF Type Term Term ID Score Pos Neg
0.17 mesh Transcription Factors 22033 5.72 7 97209
0.12 mesh Mice 151 4.46 9 871465
0.11 mesh Trans-Activators 27086 5.66 4 33904
0.10 issn 0028-0836 2089 5.00 4 65628
0.10 mesh DNA 3324 4.17 5 216992
0.09 mesh DNA-Binding Proteins 18568 4.54 4 103866
0.09 mesh p300-CBP Transcription Factors 35359 8.64 2 669
0.09 mesh Dimerization 12925 5.68 3 21766
0.09 mesh Cell Cycle Proteins 28142 5.62 3 23205
0.09 mesh TCF Transcription Factors 31605 8.23 2 1013
0.09 mesh CREB-Binding Protein 33797 8.11 2 1138
0.09 mesh MyoD Protein 30500 7.86 2 1455
0.08 mesh Binding Sites 10900 4.05 4 167953
0.08 mesh Proto-Oncogene Proteins 28649 5.04 3 41243
0.08 mesh Helix-Loop-Helix Motifs 33215 7.34 2 2461
0.08 mesh Histone Acetyltransferases 25289 7.31 2 2524
0.08 mesh Nuclear Proteins 13300 4.84 3 50373
0.08 mesh bcl-X Protein 33708 6.97 2 3553
0.08 qual metabolism 1195 4.00 10 3172368
0.07 mesh Fluorescence Polarization 23194 6.65 2 4901