Query Results

Number of results 1000
Lowest scoring result -6.27853
Abstracts of results results.html
Complete abstracts of the articles in Medline predicted to be relevant (limited number per page).
Abstracts of all results ZIP file or all_results.html
All result abstracts on a single page. (can take a long time to load - downloading the zip file is recommended)
Abstracts of input examples inputs.html
Complete abstracts of the Medline records given as relevant training examples. They have been ranked by classifier scores.
PubMed IDs of results results.txt
PubMed IDs and scores of classifier predictions, ranked by decreasing score.
PubMed IDs of inputs inputs.txt
PubMed IDs and scores of the relevant training examples.
Started at 2009/03/16 13:44:53 GMT
Time at which query was started
Finished at 2009/03/16 13:46:01 GMT
Time at which this file was written.
Feature score method scores_bgfreq
Name of the method used to calculate feature scores. Docstring for the method: The prior is 'background frequency' successes, out of 1 total occurrence in each class.
Min Document Frequency 2
We exclude features occurring fewer than this many times in the data
Base score -0.257165873983
The log likelihood ratio of an empty article (one in which every feature failed to occur).
Prior score -15.5519907291
The log of the prior probability ratio for an article being relevant versus irrelevant (added to log likelihood ratio to obtain the final score). Equals the logit of the estimated prevalence of relevant articles in Medline (which may be estimated from the input size or specified separately).
Limit 1000
The maximum number of results to include.
Threshold -30.0
Default Naive Bayes classification threshold is zero. This threshold is the minimum log probability ratio for predicting an article to be relevant.

Feature Statistics

Quantity Relevant Docs Irrelevant Docs
Number of documents 2 17031974
Number of selected, occurring features 19 41209
Total occurrences of selected features 21 231002426
Selected features per Medline record 10.500 13.563
Of the considered feature types, 41209 features are selected out of 43325 occurring at least once in training data. The aggressivity of selection is 1.051. The complete database lists 43326 potential features.

Features with high TF.IDF

Features with TF.IDF above 0.2 or 0.3 could make good keywords. TF.IDF is term frequency times inverse document frequency, where we treat the set of input citations as a single document

TF-IDF Type Term Term ID Score Pos Neg
0.58 mesh Terminology as Topic 2885 6.75 2 39864
0.50 mesh Metaphysics 9886 9.91 1 422
0.39 mesh Advisory Committees 4060 7.52 1 4606
0.39 issn 1061-4036 33183 7.50 1 4688
0.38 mesh Eukaryotic Cells 14569 7.20 1 6330
0.36 issn 0340-6717 21669 6.88 1 8754
0.35 mesh Genetics 122 6.69 1 10584
0.35 mesh Computer Communication Networks 18184 6.68 1 10741
0.35 mesh Genome, Human 30741 6.62 1 11374
0.33 mesh Molecular Biology 9401 6.28 1 15930
0.31 mesh Databases, Factual 17665 5.86 1 24352
0.28 mesh Genes 9423 5.09 1 52354
0.27 mesh Sequence Analysis, DNA 16479 4.92 1 62411
0.21 qual trends 11274 3.77 1 197193
0.19 qual classification 3972 3.26 1 330068
0.14 mesh Mice 151 2.30 1 871473
0.10 qual physiology 4331 1.42 1 2164633
0.07 mesh Animals 149 0.76 1 4262536
0.05 mesh Humans 6971 1.46 2 10368489